diff --git a/templates/kallisto-bustools_python/0.51.1/data.kallisto.arm.cpu.kgcc.config b/templates/kallisto-bustools_python/0.51.1/data.kallisto.arm.cpu.kgcc.config
index c3f6c63d132d746ad46153ffe8928ceeb30a4b74..376fd36b818549c726c69e14cb8622dce3f5db97 100644
--- a/templates/kallisto-bustools_python/0.51.1/data.kallisto.arm.cpu.kgcc.config
+++ b/templates/kallisto-bustools_python/0.51.1/data.kallisto.arm.cpu.kgcc.config
@@ -14,19 +14,20 @@ yum install libarchive -y
 module purge
 ./jarvis -install hpckit/${HPCKIT_VERSION} any
 module use ./software/utils/hpckit/${HPCKIT_VERSION}/HPCKit/${HPCKIT_VERSION}/modulefiles
-module add gcc/compiler12.3.1/gccmodule gcc/hmpi2.4.3/hmpi
+module add gcc/compiler12.3.1/gccmodule gcc/hmpi${HPCKIT_VERSION}/release
 export CC=`which gcc`
 export CXX=`which g++`
 export FC=`which gfortran`
 ./jarvis -install htslib/1.11 gcc
 module use software/moduledeps/gcc12.3.1
 module load htslib/1.11
+rm -rf kallisto-0.51.1
 tar -xzvf ${JARVIS_DOWNLOAD}/kallisto-0.51.1.tar.gz
 
 [ENV]
 module purge
 module use ./software/utils/hpckit/${HPCKIT_VERSION}/HPCKit/${HPCKIT_VERSION}/modulefiles
-module add gcc/compiler12.3.1/gccmodule gcc/hmpi2.4.3/hmpi
+module add gcc/compiler12.3.1/gccmodule gcc/hmpi${HPCKIT_VERSION}/release
 export CC=`which gcc`
 export CXX=`which g++`
 export FC=`which gfortran`
@@ -37,7 +38,7 @@ module load htslib/1.11
 app_name = kallisto 
 build_dir = ${JARVIS_ROOT}/kallisto-0.51.1/
 binary_dir =
-case_dir = ${JARVIS_ROOT}/kallisto-0.51.1/
+case_dir = ${JARVIS_ROOT}/kallisto-0.51.1/build/src/
 
 [BUILD]
 mkdir build
@@ -50,7 +51,7 @@ make install
 make clean
 
 [RUN]
-run = kallisto
+run = ./kallisto
 binary =
 nodes = 1
 
@@ -58,3 +59,4 @@ nodes = 1
 perf=
 nsys=
 ncu=--target-processes all
+
diff --git a/templates/kallisto-bustools_python/0.51.1/kallisto.arm.bisheng.hmpi.config b/templates/kallisto-bustools_python/0.51.1/kallisto.arm.bisheng.hmpi.config
index 01292ba2921b120b873b185ddf3b5b2fde519a71..96fc0d32c02b18f06342923d055810369500b338 100755
--- a/templates/kallisto-bustools_python/0.51.1/kallisto.arm.bisheng.hmpi.config
+++ b/templates/kallisto-bustools_python/0.51.1/kallisto.arm.bisheng.hmpi.config
@@ -7,15 +7,15 @@ kallisto/0.51.1 ${JARVIS_PROXY}/pachterlab/kallisto/archive/refs/tags/v0.51.1.ta
 [DEPENDENCY]
 set -e
 module purge
-
 ./jarvis -install hpckit/${HPCKIT_VERSION} any
 module use ./software/utils/hpckit/${HPCKIT_VERSION}/HPCKit/${HPCKIT_VERSION}/modulefiles
 module load bisheng/compiler${BISHENG_VERSION}/bishengmodule
-module load bisheng/hmpi${HMPI_VERSION}
-
+module load bisheng/hmpi${HMPI_VERSION}/release
 ./jarvis -install hdf5/1.12.1/clang bisheng+mpi
+module use ./software/moduledeps/bisheng${BISHENG_VERSION}-hmpi${HPCKIT_VERSION}
 module load hdf5-clang/1.12.1
-
+rm -rf ${JARVIS_ROOT}/software/apps/kallisto
+rm -rf ${JARVIS_TMP_DOWNLOAD}/kallisto-0.51.1
 mkdir -p ${JARVIS_ROOT}/software/apps/kallisto
 tar -zxf ${JARVIS_DOWNLOAD}/kallisto-0.51.1.tar.gz -C ${JARVIS_TMP_DOWNLOAD}
 
@@ -23,7 +23,8 @@ tar -zxf ${JARVIS_DOWNLOAD}/kallisto-0.51.1.tar.gz -C ${JARVIS_TMP_DOWNLOAD}
 module purge
 module use ./software/utils/hpckit/${HPCKIT_VERSION}/HPCKit/${HPCKIT_VERSION}/modulefiles
 module load bisheng/compiler${BISHENG_VERSION}/bishengmodule
-module load bisheng/hmpi${HMPI_VERSION}
+module load bisheng/hmpi${HMPI_VERSION}/release
+module use ./software/moduledeps/bisheng${BISHENG_VERSION}-hmpi${HPCKIT_VERSION}
 module load hdf5-clang/1.12.1
 
 [APP]
@@ -47,3 +48,4 @@ make clean
 run = ${JARVIS_ROOT}/software/apps/kallisto/bin/kallisto index -i transcripts.idx transcripts.fasta.gz &&
 binary = kallisto quant -i transcripts.idx -o reads-ouput -b 100 reads_1.fastq.gz reads_2.fastq.gz && head -n 20 reads-ouput/abundance.tsv
 nodes = 1
+